CONTACT US
Online Order

HOME
SERVICES
DNA Synthesis

Gene Synthesis

Gene Shuttle Vector

Fragment XP Synthesis

High-throughput Gene Synthesis

ssDNA Synthesis

Pathway Synthesis

Small Genome Synthesis

Adenovirus Genome Synthesis

Antibody Gene Synthesis

ProXpress

Vector Selection

Vector Selection Guide

Vector Libraries

Molecular Biology

Plasmid DNA Preparation

PCR Cloning & Subcloning

Site-Directed Mutagenesis

Oligo Synthesis

Custom DNA Oligos

Diagnostic Probes & Oligos

NGS Oligos

Modified Oligos

Antisense Oligonucleotides

CpG ODNs

Oligo Libraries

RNA Synthesis

Custom RNA Oligos

RNA Modification

siRNA/miRNA Synthesis

Long RNA Synthesis

sgRNA Synthesis

In Vitro Transcription

Variant Libraries

Variant Libraries

Synthetic CDR Variant Antibody Libraries

CRISPR Libraries

CRISPR Libraries Construction

Standard Human CRISPR Libraries

Standard Mouse CRISPR Libraries

Standard Poultry CRISPR Libraries

Standard Animal CRISPR Libraries

Standard Microbial CRISPR Libraries

Standard sgRNA Library Cell Pool

Oligo Pools
Virus Packaging

Lentivirus Packaging

Adenovirus Packaging

Adeno-associated Virus Packaging

Gene Editing

sgRNA Customized Design

CRISPR Libraries Construction

ssDNA Synthesis

sgRNA Bioinformatics Analysis

Human Gene CRISPR-KO Vectors

High-throughput Gene Editing Vectors

Protein Expression

Codon Optimization

Mammalian Expression

Bacterial Expression

Yeast Expression

Insect Expression

Recombinant Streptavidin

Protein A/ Protein G/ Protein L

Antibody Services

Hybridoma Antibody Sequencing

Immune Repertoire Sequencing

Antibody NGS Data Analysis

Antibody Affinity Maturation

Antibody Humanization

Recombinant Ab Production

Monoclonal Antibody Preparation

Polyclonal Antibody Preparation

Single Domain Antibody(sdAb)

Synthetic CDR Variant Antibody Libraries

Error-prone scFv Variant Antibody Libraries

Peptide Services

Custom Peptide Synthesis

Peptide Library

Peptide Modification

DNA Data Storage
PRODUCTS
ONE STOP SOLUTION
RESOURCES
ABOUT US
Bioinformatics Tools
Home > Bioinformatics Tools > Bioinformatics Tools
DNA Molecular Design ToolsView More

    Tools Description Resource Link
    Gene Editing MIT: Input sequence and can discover possible off targets genome-wide + highlighting guides with high target specificity Guide Design Zhang Lab
    Gene Editing CRISPR-ERA: a comprehensive design tool for CRISPR-mediated gene editing, repression and activation sgRNA design Stanford
    Gene Editing Cas-Database: web-based genome-wide guide RNA library design for gene knockout screens using CRISPR-Cas9 CRISPR RGEN Tools
    Gene Editing GenomeCRISPR: a database for high-throughput CRISPR/Cas9 screens GenomeCRISPR
    Codon Optimization Codon Optimizer: Remove/add motifs + codon optimization Codon Optimizer
    PCR Primer Design Primer3Plus: Picks primers from a DNA sequence Primer3Plus
    PCR Primer Design Primer-Blast: Tool for finding primers specific to PCR template Primer-Blast
    Molecular Design Molecular Design ToolKit: Requires python, able to design and visualize interaction in molecular systems Molecular Design Toolkit
    Molecular Design AmiRNA: Design artificial micro RNAs based on data provided by user AmiRNA Designer

Gene Analysis ToolsView More

    Tools Description Resource Link
    Sequencing and Genomic Assemblers Abyss: de novo, parallel, pair-end sequence assembler designed for short reads, show what sequence will become ABySS
    Sequencing and Genomic Assemblers Cufflinks: Assembles transcripts, estimates abundances, tests for differential expression and regulation in RNA-Seq samples Cufflinks
    Sequencing and Genomic Assemblers Cortex Con: de novo gene assembly, multisample variant calling, manipulating and assembling graphs McCortex
    Sequencing and Genomic Assemblers BioEdit: Sequence Aligner, plasmid drawing, multiple analysis tools BioEdit
    Sequencing and Genomic Assemblers CAP3: Sequence Assembly Program (Contigs, Single Sequence) CAP3 Sequence Assembly Program
    Sequencing and Genomic Assemblers SSAKE: de novo genome assembly with short DNA sequence reads SSAKE
    Sequencing and Genomic Assemblers FALCON: Allows alignment of long reads for consensus and assembly FALCON
    Gene Sequence Analysis GLIMMER: Identify areas of coding vs. non-coding in microbial DNA GLIMMER
    Gene Sequence Analysis EMBOSS Seqret: Reads/Writes sequences (Extract sequences from database, display/reformat sequence, FASTA file converter, reverse complement, sequence case conversion) EMBOSS Seqret
    Gene Sequence Analysis PlasMapper: Generates and annotates plasmid maps with given plasmid sequence PlasMapper
    Gene Sequence Analysis HMMER: Searching databases for sequence homologs + alignments HMMER
    Gene Sequence Analysis Artemis: Visualization of sequence features, next generation data Artemis
    Gene Sequence Analysis BLAST: Genome database + sequence alignment tool BLAST
    Gene Sequence Analysis CD-Hit: Clustering/comparing nucleotide or protein sequences CD-Hit
    Gene Sequence Analysis FASTX-TOOLKIT: Preprocess fastx/q files to produce better mapping (alignment) results to reference other genomes/databases FASTX-Toolkit
    Gene Sequence Analysis Bioperl: Sequence Alignment, manipulating sequences, transforming formats, accessing data from databases Bioperl
    Gene Sequence Analysis CLUSTALW: Multiple Sequence Alignment CLUSTALW
    Gene Sequence Analysis T-COFFEE: Align DNA, RNA, or Protein Sequences T-COFFEE
    Gene Sequence Analysis Reverse Complement: Outputs the reverse complement sequence Reverse Complement

Sanger Sequencing ToolView More

    Tools Description Resource Link
    Sanger Sequencing OMIC Sanger Sequencing: Supplies different types of tools related to Sanger Sequencing OMIC Sanger Sequencing

DNA/RNA + Protein TranslationView More

    Tools Description Resource Link
    DNA/RNA – Protein ExPASy: Translates DNA/RNA sequence to protein sequence ExPASy
    Protein – DNA Sequence Manipulation Suite: Reverse translation Sequence Manipulation Suite

Property Calculator (DNA + Protein)View More

    Tools Description Resource Link
    Property Calculator DNA + Protein Calculator: Properties of DNA + Protein Property Calculator
    Protein Structure + Function Pfam: Finds protein alignment/matches, domain organization + function Pfam
    Protein Structure + Function PROSITE: Protein domains, functional sites, associated patterns PROSITE
    Protein Structure + Function CATH: Classifications of proteins downloaded from PDB, predict locations of structural domains, structure, function and evolution of proteins CATH
    Protein Structure + Function SWISS-MODEL: Protein structure homology modelling server SWISS-MODEL

Antibody SequencingView More

    Tools Description Resource Link
    Antibody Sequencing Igblast: A tool for immunoglobulin (IG) and T cell receptor (TR) V domain sequences Igblast
    Antibody Sequencing IMGT: the international ImMunoGeneTics information system IMGT

Databases And Other ResourcesView More

    Tools Description Resource Link
    Databases Sanger Institute: Provides many different tools for genome analysis Sanger Institute
    Databases Protein Data Bank: Provides numerous information related to proteins Protein Data Bank
    Databases NCBI: Genome Database Genome Database
    Databases OMIC Tools: Provides selection of bioinformatics tools OMIC Tools
    Other Resources Elements of Genomics: Offers numerous popular bioinformatic tools Elements of Genomics
    Other Resources Researchgate: Article offering insight on tools for gene and protein sequence analysis Researchgate

Promotions
Resources
Quick Order
Contact Us
SERVICES
DNA Synthesis
Vector Selection
Molecular Biology
Oligo Synthesis
RNA Synthesis
Variant Libraries
CRISPR Libraries
Oligo Pools
Virus Packaging
Gene Editing
Protein Expression
Antibody Services
Peptide Services
DNA Data Storage
PRODUCTS
Standard Oligo
Standard CRISPR Libraries
Standard CRISPR Plasmid
ProXpress
Protein Products
ONE STOP SOLUTION
High Performing DNA-RNA-Protein Molecules
Oligonucleotide Diagnostics & Therapeutics
Precision Gene Editing
Bringing Al-designed Proteins to Life
Technologies Needed for AI-Enhanced Protein Production
Value Chain
RESOURCE
Promotions
Events
Blogs
Case Studies
FAQs
Client Publications
Bioinformatics Tools
  • Address:
    9 Deer Park Dr., Suite J-25
    Monmouth Junction, NJ 08852

This website stores cookies on your computer. These cookies are used to collect information about how you interact with our website and allow us to remember you.
To find out more about the cookies we use, see our Privacy Policy.

Accept

Welcome to our Case Study Showcase!

We're delighted to have you explore the depth and breadth of our expertise through our curated case studies. To gain access to these insightful resources, we kindly ask you to take a moment to fill out the form below. Your information will help us tailor future content to better serve your needs and interests.

  • First name?*
  • Last name?*
  • Email?*
  • What is your research application? *

  • You agree to receive communications from Synbio Technologies.

    View our Privacy Policy